CESSHIV-1 database

General information on HIV-1 isolate

# 1453

Accession number	EF370179
Name	05CSR5_2907
Subtype	B
Country	South Korea (USA)
Sampling year	2005
Patient	HP-21(CSR)

EF370179 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

EU047604(#1624) EU047619(#1821)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy