CESSHIV-1 database

General information on HIV-1 isolate

# 1624

Accession number	EU047604
Name	99CSR10_3100
Subtype	B
Country	South Korea (USA)
Sampling year	1999
Patient	HP-21(CSR)

EU047604 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

EF370179(#1453) EU047619(#1821)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy