CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1736
Accession number EF370267
Name 97KYR2_2650
SubtypeB
CountrySouth Korea
Sampling year 1997
PatientKYR

EF370267 isolate has foldings of [DIS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc cgaaaaattt tttgactagc ggaggctaga aggagaga

Isolates with identical sequences of region:

EF370263(#1733)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy