CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1736
Accession number EF370267
Name 97KYR2_2650
SubtypeB
CountrySouth Korea
Sampling year 1997
PatientKYR

EF370267 isolate has foldings of [DIS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ctttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

DQ295196(#) EF370261(#2244) EF370262(#2246) EF370265(#2247) EF370268(#1737) EF370281(#1742) EU047674(#2273)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy