CESSHIV-1 database

General information on HIV-1 isolate

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Accession number	DQ295196
Name	04KYR8
Subtype	B
Country	South Korea
Sampling year	2004
Patient	KYR

DQ295196 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ctttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

EF370261(#2244) EF370262(#2246) EF370265(#2247) EF370267(#1736) EF370268(#1737) EF370281(#1742) EU047674(#2273)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy