CESSHIV-1 database

General information on HIV-1 isolate

# 1739

Accession number	EF370271
Name	05KYR10_2617
Subtype	B
Country	South Korea
Sampling year	2005
Patient	KYR

EF370271 isolate has foldings of [DIS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaacg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AF069140(#52) EF370293(#1745) EF370297(#1748)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy