CESSHIV-1 database

General information on HIV-1 isolate

# 1739

Accession number	EF370271
Name	05KYR10_2617
Subtype	B
Country	South Korea
Sampling year	2005
Patient	KYR

EF370271 isolate has foldings of [DIS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctagttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctata agtagtgtgt gcccat----tgtg tgactctggt at

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy