CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1835
Accession number EU047636
Name 99OSG2_3313
SubtypeB Korean
CountrySouth Korea
Sampling year 1999
PatientDNR-O(OSG)

EU047636 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaccg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt gactaccgga ggctacaaga aaaaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy