CESSHIV-1 database

General information on HIV-1 isolate

# 1835

Accession number	EU047636
Name	99OSG2_3313
Subtype	B Korean
Country	South Korea
Sampling year	1999
Patient	DNR-O(OSG)

EU047636 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgaaccct cagatgctgc ataaaagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tctgagcctg agagctctct ggctgactag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

EF370306(#1754) EU047637(#1836) EU047640(#1838)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy