CESSHIV-1 database

General information on HIV-1 isolate

# 1007

Accession number	EU220698
Name	04CA7750
Subtype	A1C
Country	Canada (Rwanda)
Sampling year	2004
Patient	7750

EU220698 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc tt---ttttgact agcggaggct agaaggagag a

Isolates with identical sequences of region:

AY900573(#1424)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy