CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1007
Accession number EU220698
Name 04CA7750
SubtypeA1C
CountryCanada (Rwanda)
Sampling year 2004
Patient7750

EU220698 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtttga ctctggtaac tagagatccc tcagaccact ctagactgtg ta-aaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtgt t-ccagagaag ttctctcgac gcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012