CESSHIV-1 database

General information on HIV-1 isolate

# 1049

Accession number	EU735535
Name	04BRRJ179
Subtype	CRF39_BF
Country	Brazil
Sampling year	2004

EU735535 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caa---ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

EF514706(#1016)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy