CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1049
Accession number EU735535
Name 04BRRJ179
SubtypeCRF39_BF
CountryBrazil
Sampling year 2004

EU735535 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtatc tagagatccc tcagaccatt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012