CESSHIV-1 database

General information on HIV-1 isolate

# 2406

Accession number	FJ614995
Name	04HAS1_4194
Subtype	CRF02_AG
Country	South Korea
Sampling year	2004
Patient	HAS

FJ614995 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggactcggc ttgctgaggt gcacacagca agaggcgaga g-cggcgactg gtgagtacgc caat--ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AB485633(#2736) AF107770(#68) FJ614971(#2391) FJ614973(#2392) FJ614975(#2394) FJ614996(#2407) FJ614997(#2408) FJ614998(#2409) FJ614999(#2410)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy