CESSHIV-1 database

General information on HIV-1 isolate

# 3422

Accession number	GQ429858
Name	clone_42
Subtype	A1
Country	Kenya
Sampling year	1995
Patient	1(35465)

GQ429858 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aat--ttttgac tagcagaggc tagaaggaga ga

Isolates with identical sequences of region:

AB286851(#941) AB286852(#942) FJ614981(#2397) GQ429819(#3383) GQ429822(#3386) GQ429825(#3389) GQ429827(#3391) GQ429829(#3393) GQ429831(#3395) GQ429833(#3397) GQ429835(#3399) GQ429836(#3400) GQ429837(#3401) GQ429840(#3404) GQ429845(#3409) GQ429846(#3410) GQ429852(#3416) GQ429861(#3425)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy