CESSHIV-1 database

General information on HIV-1 isolate

# 941

Accession number	AB286851
Name	p03GH173_06_37
Subtype	CRF06_cpx
Country	Ghana
Sampling year	2003
Patient	173

AB286851 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aat--ttttgac tagcagaggc tagaaggaga ga

Isolates with identical sequences of region:

AB286852(#942) FJ614981(#2397) GQ429819(#3383) GQ429822(#3386) GQ429825(#3389) GQ429827(#3391) GQ429829(#3393) GQ429831(#3395) GQ429833(#3397) GQ429835(#3399) GQ429836(#3400) GQ429837(#3401) GQ429840(#3404) GQ429845(#3409) GQ429846(#3410) GQ429852(#3416) GQ429858(#3422) GQ429861(#3425)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy