CESSHIV-1 database

General information on HIV-1 isolate

# 941

Accession number	AB286851
Name	p03GH173_06_37
Subtype	CRF06_cpx
Country	Ghana
Sampling year	2003
Patient	173

AB286851 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gaagctgcat aaaagcagcc gcttctcgct tgtactgggt ctctcttgtt agaccagatc tgagcctggg agctctctgg ctagc-aggag aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttacagtagt gt

Isolates with identical sequences of region:

AB286852(#942)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy