CESSHIV-1 database

General information on HIV-1 isolate

# 3292

Accession number	GQ999972
Name	CAP8_3w_F2
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP8

GQ999972 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy