CESSHIV-1 database

General information on HIV-1 isolate

# 3365

Accession number	GQ999975
Name	CAP61_8w_F3
Subtype	C
Country	South Africa
Sampling year	2004
Patient	CAP61

GQ999975 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcag gaggcgagag g-ggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy