CESSHIV-1 database

General information on HIV-1 isolate

# 3365

Accession number	GQ999975
Name	CAP61_8w_F3
Subtype	C
Country	South Africa
Sampling year	2004
Patient	CAP61

GQ999975 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat gtggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagaa gatctctcga cgcagggc

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy