CESSHIV-1 database

General information on HIV-1 isolate

# 3347

Accession number	HM026460
Name	07BR_FPS812
Subtype	CRF46_BF
Country	Brazil
Sampling year	2007
Patient	FPS812

HM026460 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc aaa--ttttgac tagcagaggc tagaaggaga ga

Isolates with identical sequences of region:

DQ189088(#2213) FJ771006(#1852) HM026456(#3295) HM026457(#3329)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy