CESSHIV-1 database

General information on HIV-1 isolate

# 19

Accession number	K02013
Name	BRU
Subtype	B
Country	France
Sampling year	1983
Patient	LAI

K02013 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gaggcgactg gtgagtacgc caaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

A04321(#1102) A07867(#1105) D86068(#1094) L31963(#2368) S69386(#2487)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy