CESSHIV-1 database

General information on HIV-1 isolate

# 1094

Accession number	D86068
Name	MCK1, LAI, IIIB
Subtype	B
Country	France
Sampling year	1983
Patient	LAI

D86068 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gaggcgactg gtgagtacgc caaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

A04321(#1102) A07867(#1105) K02013(#19) L31963(#2368) S69386(#2487)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy