CESSHIV-1 database

General information on HIV-1 isolate

# 1094

Accession number	D86068
Name	MCK1, LAI, IIIB
Subtype	B
Country	France
Sampling year	1983
Patient	LAI

D86068 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

AB221005(#685) AB253432(#914) AF003888(#1197) AF004394(#22) AY610991(#2052) EF363124(#966) K02083(#70) U80521(#2540) U80530(#2549) U81470(#2575)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy