CESSHIV-1 database

General information on HIV-1 isolate

# 2728

Accession number	AB485648
Name	SE365
Subtype	D
Country	Senegal
Sampling year	1990
Patient	SE365

AB485648 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

D10112(#76) U80515(#2534) U80517(#2536) U81455(#2560) U81456(#2561) U81458(#2563) U81460(#2565) U81462(#2567) U81479(#2584) U81480(#2585) U81481(#2586)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy