CESSHIV-1 database

General information on HIV-1 isolate

# 2563

Accession number	U81458
Name	VE5NEF
Subtype	B
Country	Venezuela
Sampling year	1991
Patient	5

U81458 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AB485648(#2728) D10112(#76) U80515(#2534) U80517(#2536) U81455(#2560) U81456(#2561) U81460(#2565) U81462(#2567) U81479(#2584) U81480(#2585) U81481(#2586)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy