CESSHIV-1 database

General information on HIV-1 isolate

# 2563

Accession number	U81458
Name	VE5NEF
Subtype	B
Country	Venezuela
Sampling year	1991
Patient	5

U81458 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa aacgaaagta gaaccggagg agctctctcg acgcaggac

Isolates with identical sequences of region:

D10112(#76) DQ295194(#571) U81455(#2560) U81462(#2567) U81480(#2585)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy