CESSHIV-1 database

General information on HIV-1 isolate

# 2386

Accession number	FJ614964
Name	08MHI4_4659
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2008
Patient	MHI

FJ614964 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccattata gcttgagta-a aaatctctag ca

Isolates with identical sequences of region:

FJ614945(#2362) FJ614959(#2382) FJ614966(#2388) FJ614968(#2389)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy