CESSHIV-1 database

General information on HIV-1 isolate

# 2389

Accession number	FJ614968
Name	08MHI11_5585
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2008
Patient	MHI

FJ614968 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccattata gcttgagta-a aaatctctag ca

Isolates with identical sequences of region:

FJ614945(#2362) FJ614959(#2382) FJ614964(#2386) FJ614966(#2388)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy