CESSHIV-1 database

General information on HIV-1 isolate

# 2398

Accession number	FJ614982
Name	05KSN5_4228
Subtype	CRF02_AG
Country	South Korea (Gabon)
Sampling year	2005
Patient	KSN

FJ614982 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AY610980(#2040) AY610984(#2044) AY610987(#2045) AY932659(#2129) AY932669(#2139) FJ614987(#2402) FJ614988(#2403)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy