CESSHIV-1 database

General information on HIV-1 isolate

# 2398

Accession number	FJ614982
Name	05KSN5_4228
Subtype	CRF02_AG
Country	South Korea (Gabon)
Sampling year	2005
Patient	KSN

FJ614982 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagcc gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcagggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

Isolates with identical sequences of region:

AY611004(#3138) FJ614987(#2402) FJ614988(#2403)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy