CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 243
Accession number L39106
Name IbNg
SubtypeCRF02_AG
CountryNigeria
Submitted to NCBI 1996
PatientIbNG

L39106 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctga ttgtgtgact ctggtaacta gagatccctc agaccactct agactgtgta -aaaatctcta gca

Isolates with identical sequences of region:

DD409979(#1669)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012