CESSHIV-1 database

General information on HIV-1 isolate

# 243

Accession number	L39106
Name	IbNg
Subtype	CRF02_AG
Country	Nigeria
Submitted to NCBI	1996
Patient	IbNG

L39106 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgattgtgtg actctggtaa ctagagatcc ctcagaccac tctagactgt gta-aaaatct ctagcagtgg cgcccgaaca gg-acttgacg gtaataggga ctcgaaagcg aaagtt---ccag agaagatctc tcgacgcaag gac

Isolates with identical sequences of region:

DD409979(#1669)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy