CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1669
Accession number DD409979
Name IbNG-patent
SubtypeCRF02_AG
CountryJapan
Submitted to NCBI 2006
PatientIbNG
CommentsPatent

DD409979 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgattgtgtg actctggtaa ctagagatcc ctcagaccac tctagactgt gta-aaaatct ctagcagtgg cgcccgaaca gg-acttgacg gtaataggga ctcgaaagcg aaagtt---ccag agaagatctc tcgacgcaag gac

Isolates with identical sequences of region:

L39106(#243)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012