CESSHIV-1 database

General information on HIV-1 isolate

# 2566

Accession number	U81461
Name	VE8NEF
Subtype	B
Country	Venezuela
Sampling year	1991
Patient	8

U81461 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtagctag agatccctca gaccctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF538306(#1079) AY851678(#2099) EF370350(#1786) L28867(#2435)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy