CESSHIV-1 database

General information on HIV-1 isolate

# 1786

Accession number	EF370350
Name	05CMS5_2730
Subtype	B
Country	South Korea
Sampling year	2005
Patient	CMS

EF370350 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtagctag agatccctca gaccctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF538306(#1079) AY851678(#2099) L28867(#2435) U81461(#2566)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy