CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1409
Accession number AF539406
Name ML170_1995
SubtypeA1C
CountryKenya
Sampling year 1995
PatientML170

AF539406 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtagag actctggtaa ctagagatcc ctcagaccac tctagactga gta-aaaatct ctagcagtgg cgcccgaaca gggactcgaa agcgaaagtt ---ccagagaagt tctctcgacg caggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012