General information on HIV-1 isolate
# 239
| Accession number |
AY162223 |
| Name | TV001 clone 8_5 |
| Subtype | C |
| Country | South Africa |
| Sampling year |
1998 |
| Patient | TV001 |
AY162223 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .
The region encompassing PBS domainThe primary sequence:
tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggaccagaa agtgaaagtg agaccagagg agatctctcg acgcaggac
Isolates with identical sequences of region:
AX455917(#1084)
BD437615(#1090)
The optimal secondary structure:
The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy
