CESSHIV-1 database

General information on HIV-1 isolate

# 239

Accession number	AY162223
Name	TV001 clone 8_5
Subtype	C
Country	South Africa
Sampling year	1998
Patient	TV001

AY162223 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

acttgggagt ggtcaaccct cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctctcg gtagaccaga tctgagcctg ggagccctct ggctatctag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

AX455917(#1084) AY047308(#3184) BD437615(#1090)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy