CESSHIV-1 database

General information on HIV-1 isolate

# 324

Accession number	AY463226
Name	C.ZA.1217MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1217M

AY463226 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

AY878056(#514) GQ999985(#3375)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy