CESSHIV-1 database

General information on HIV-1 isolate

# 514

Accession number	AY878056
Name	03ZASK006B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-006

AY878056 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

AY463226(#324) GQ999985(#3375)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy