CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 421
Accession number AY727527
Name 04BR142
SubtypeCRF31_BC
CountryBrazil
Sampling year 2004

AY727527 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagatacct tttgtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagtg agaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012