CESSHIV-1 database

General information on HIV-1 isolate

# 421

Accession number	AY727527
Name	04BR142
Subtype	CRF31_BC
Country	Brazil
Sampling year	2004

AY727527 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc atttttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY727525(#420) GQ365651(#3314) U52953(#21)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy