CESSHIV-1 database

General information on HIV-1 isolate

# 420

Accession number	AY727525
Name	04BR073
Subtype	C
Country	Brazil
Sampling year	2004

AY727525 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc atttttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY727527(#421) GQ365651(#3314) U52953(#21)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy