CESSHIV-1 database

General information on HIV-1 isolate

# 3314

Accession number	GQ365651
Name	01_BR_RGS45
Subtype	BC
Country	Brazil
Sampling year	2001

GQ365651 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc atttttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY727525(#420) AY727527(#421) U52953(#21)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy