CESSHIV-1 database

General information on HIV-1 isolate

# 1428

Accession number	AY900580
Name	CB340
Subtype	CRF24_BG
Country	Cuba
Sampling year	2003

AY900580 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ytagacagtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtta acagggactc gaaagcgaaa gtt---ccagaga agttctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy