CESSHIV-1 database

General information on HIV-1 isolate

# 1428

Accession number	AY900580
Name	CB340
Subtype	CRF24_BG
Country	Cuba
Sampling year	2003

AY900580 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaat-ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AB253641(#764) AB253644(#767) AB253645(#768) AF119819(#60)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy