CESSHIV-1 database

General information on HIV-1 isolate

# 60

Accession number	AF119819
Name	GR84_97PVMY
Subtype	CRF04_cpx
Country	Greece
Sampling year	1997
Patient	GR84

AF119819 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaat-ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AB253641(#764) AB253644(#767) AB253645(#768) AY900580(#1428)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy