CESSHIV-1 database

General information on HIV-1 isolate

# 768

Accession number	AB253645
Name	pJPDR1741AE49
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	DR1741

AB253645 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaat-ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AB253641(#764) AB253644(#767) AF119819(#60) AY900580(#1428)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy