CESSHIV-1 database

General information on HIV-1 isolate

# 1093

Accession number	CS793684
Name	LAI-IIIB
Subtype	B
Country	Belgium
Submitted to NCBI	2007
Patient	LAI
Comments	Patent, synthetic DNA

CS793684 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaaggg aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

A04321(#1102) AB485639(#2742) AY835749(#584) CS793683(#3475) D86068(#1094) D86069(#1095) DM461230(#3476) DM461231(#3477) EF363124(#966) K02013(#19) K02083(#70) L28869(#2437) L28873(#2441) L28906(#2474) U24466(#2380) U24468(#2488) U24469(#2489) U24470(#2490) U24472(#2492) U24473(#2493) U24474(#2494) U24478(#2495) U24479(#2496) U24480(#2497) U69590(#260) U69591(#261) U69593(#263) U80519(#2538)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy